HighChart = function(containerId, options) {

    new Application.highChart(containerId, options);

};

if (Application === "undefined" || !Application) {

    var Application = {};

}

Application.highChart = function() {

    this._init.apply(this, arguments);

};

Application.highChart.prototype = {

    _containerId : null,

    _options : null,

    _workId : null,

    _fileName : null,

    _highChartContainerId : null,

    _appProperty : null,

    _default : {

        filterNamespace : "http://linkdata.org/",

        propertyFilterNamespace : "http://linkdata.org/property",

        propertyFilterExpression : "Expression",

        subjectUriPhrase : "http://atted.jp/data/locus/",

        subjectPPDBUriPhrase : "http://ppdb.agr.gifu-u.ac.jp/ppdb/cgi-bin/display.cgi?organism=At&gene=",

        selectSubjectClass : "selectSubject",

        drawArea : "drawArea"

    },

    _init : function(containerId, options) {

        this._containerId = containerId;

        this._options = $.extend({}, this._default, options);

        this._workId = this._options.workId;

        this._fileName = this._options.fileName;

        var date = new Date();

        this._highChartContainerId = "high_chart_" + date.getTime();

        this._initAppProperty(this._options);

        this._initView();

        this._initSelect();

    },

    _initAppProperty : function(opts) {

        var obj = {

            workId : opts.workId,

            fileName : opts.fileName

        };

        this._appProperty = new Application.motifProperty(obj);

    },

    _initView : function() {

        var self = this;

        var sb = [];

        sb[sb.length] = "<div class='row'>";

        sb[sb.length] = "<div class='label left'>Select Subject</div>";

        sb[sb.length] = "<div class='left'>";

        sb[sb.length] = "<select class='" + self._default.selectSubjectClass + "'>";

        sb[sb.length] = "<option value='" + -1 + "'>-- Select Subject --</option>";

        $.each(LinkData.getSubjects(self._workId, self._fileName), function(subKey, subValue) {

            var label = self._getLabel(subValue);

            sb[sb.length] = "<option value='" + subValue + "'>" + label + "</option>";

        });

        sb[sb.length] = "</select>";

        sb[sb.length] = "</div>";

        sb[sb.length] = "</div>";

        sb[sb.length] = "<div id='" + self._highChartContainerId + "'></div>";

        $("#" + this._containerId).append(sb.join(""));

    },

    _initSelect : function() {

        var self = this;

        $select = $("#" + self._containerId + " ." + self._default.selectSubjectClass);

        $select.change(function() {

            var subject = $("option:selected", this).val();

            var dataArray = self._getDataArray(self._workId, self._fileName, subject);

            var xCategory = self._getXCategory(self._workId, self._fileName, subject);

            self._drawChart(self._highChartContainerId, dataArray, xCategory);

        });

    },

    _getDataArray : function(workId, fileName, subject) {

        var self = this;

        var tripleList = LinkData.getTriplesBySubject(workId, fileName, subject);

        var dataArray = [];

        var dataObject = {};

        var array = [];

        var duplicateProperty = [];

        $.each (tripleList, function(tKey, tValue) {

            var property = tValue.property;

            if (property.indexOf(self._options.filterNamespace) == -1) {

                return;

            }

            if ($.inArray(property, duplicateProperty) > -1) {

                return;

            }

            if (property.indexOf(self._options.propertyFilterNamespace) == -1 || property.indexOf(self._options.propertyFilterExpression) > -1) {

                array.push(parseFloat(tValue.object));

                duplicateProperty.push(property);

            }